Walt's experiment on Jeanne-Marie in Alpha Flight #17 isn't the only change she has undergone: in the issue of Secret War II (written by Jim Shooter) with AF, it showed the first time the twins' powers negated each other...unless I've missed it somewhere (else) between AF #17 and AF#29.
Prior to publishing the huge compilation of early-era Alpha Flight, maybe some of the current and former creators and editors could share their views on whether they believe AF# 29 is a seamless, fluid continuation of the Byrne run.